Stefan Negru

pivy-importer: local repository could not find artifact ... under different name

3

I am having a issue with creating a specific artifact in the local repository, namely swagger-spec-validator. Create the artifact using `java -jar /var/lib/pivy-importer-0.3.39-all.jar --repo /data swagger-spec-validator:2.0.2`, it adds it however...

Testing Consumer Example

2

More of a request than an actual issue. I have been using the library successfully and thank you for that, however I reached a point of doing the unit tests...

Discrepancies between descriptions and type definitions

4

Short version: More of a request rather than an issue, and maybe there is some CA4GH convention (and I could not find anything about it), but there seems to be...

varianttype and alternateBases and matename should use oneof construct in OpenAPI specs

4

Related to https://github.com/ga4gh-beacon/specification/issues/273 and https://github.com/ga4gh-beacon/specification/issues/277#issuecomment-483760720 Seems like: * `alternateBases` or `variantType` cannot be used with `mateName`; * if a query specifies `variantType=BND` it seems like it is a looks `mateName`...

This has been identified in #252 but here it is as a separate issue. I think https://swagger.io/docs/specification/data-models/oneof-anyof-allof-not/#oneof should be used for alternateBases and variantType see lines: * https://github.com/ga4gh-beacon/specification/blob/master/beacon.yaml#L119 * https://github.com/ga4gh-beacon/specification/blob/master/beacon.yaml#L134...

AssemblyId regex

3

In a similar fashion with https://github.com/ga4gh-beacon/specification/issues/221 I think the `assemblyId` can benefit from its own regex in the specification considering: > Assembly identifier (GRC notation, e.g. GRCh37). Regular expression: `^(GRC.+)$`...