blakely3dnm

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partial hallucination with multiple chains

I gave this a try for a 3 chain complex and while the index offset created a gap at the desired locations, the gap stays at most ~1 residue in...

Point size in real world units/scale points with distance

any chance we could get this implemented for the ortographic viewer? @mpottinger Is your implementation in the form of a CC plugin or something you could easily share?

Predicted structure is way different from the RSCB PDB structure.

Hi. It runs a prediction for each fasta sequence so yes you will need to use a colon. Also, you will need to give it two copies of the IR...

when I use GPU to accelarate colabfold_search , it slower than colabfold_search by using cpu

mmseqs requires padded sequence databases for GPU acceleration and its not clear whether that is happening from the log. Perhaps this is the issue?

when I use GPU to accelarate colabfold_search , it slower than colabfold_search by using cpu

you could try `mmseqs makepaddedseqdb` and use the output database as the target for colabfold_search