Bryan Lajoie

Thanks! No - that environment variable was a fictional creation on my part. Sticking to a well known standard is best. Or perhaps parsing additional information from the supplied s3...

Adding visibility from https://github.com/samtools/htslib/pull/506 discussion - it would also be helpful to add a way to force path_style/virtual_style urls. Our use-case is to always force path_style. Something like: ~/.aws/credentials [profile]...

Looks like an incarnation of this already exists! https://github.com/4dn-dcic/pairix

This is still an open issue no? If you launch with a branch name, fail, and then go to relaunch. The previous git hash will be set in the revision...

Thanks @jkbonfield. We will discuss internally and can provide an update at the next GA4GH meeting. Can you share the details re. the meeting invite? bryan.lajoie at elembio.com

Here is a publicly available, HG002/NA24385 WGS PCR-Free dataset (fastq). https://go.elementbiosciences.com/access-seq-datasets-060622

Interesting timing, we are looking for the exact same thing. It would be nice to expose IOPS/Throughput for gp3 ebs-autoscale volumes.

Added a few commits to @MrMarkW's PR, the code is now working well. Can we consider adding this in?

Sorry all - had to pivot to some other high priority work. Hoping to come back to this soon to finish this off! Appreciate your patience on this ! :)

yes please cut a fresh tag+release if possible @wleepang ! many thanks !