Benjamin Stewart

> Well, a larger k will always produce a smaller loss (assuming they both reach the global minimum). There are methods that attempt to get around this with correction factors...

I am also getting this error with MToolBox-1.2.1 Works for one sample, but will not produce a vcf file when tasked with multiple input samples.

Duplicate of #15

I also get ``` clang: error: unsupported option '-fopenmp' error: command 'gcc' failed with exit status 1 ---------------------------------------- Failed building wheel for mnnpy Running setup.py clean for mnnpy Failed to...

@aopisco ideally i'd like to integrate with my R workflow. Scanpy is a bit fiddly in terms of working with reticulate, which is why I thought i'd try mnnpy directly.

@aopisco I've got a lot of cells! Looking for a fast implementation of mnncorrect and in R it is really very slow. Their fastMNN works fast - my experience is...

In fact, what is more, installation of scanpy on my mac did not include mnnpy (or mnn_correct as it is called there) presumably because it cannot be installed because of...

After much reinstalling, and steps I almost certainly cannot replicate, it now installs. Required installing llvm from brew and lomp from brew....

> > > I also have a similar question. I am not sure if the returned seurat object contaions the data used for genearlized liear regression, usch as vecotor from...

Thanks @joschif really helpful .. - can I suggest that you make it a bit clearer what these input requirements are in the readme/vignettes?