Bernie Pope

Fair enough, although sometimes it is useful to be able to close the file handle before waiting for GC to remove the object. Perhaps this detail can be added to...

I can also confirm that setting the option enableRemoteReadRetrievalForInsertionsInGermlineCallingModes to 0 made a drastic improvement to the runtime of Manta some germline WGS ~40x samples using GRCh38 as a reference....

I think it is about the use of pkg_resources, which seems to come from setuptools. A little bit of reading suggests that more reading is required. Python packaging seems to...

Wow, thanks @ewels. Will check it out.

I think documentation in the form of some examples would be very helpful, yes. Can it be done with normal Haddock style comments in the source code? https://github.com/bjpop/language-python/blob/master/src/Language/Python/Common/AST.hs I'm not...

Thanks @BenjaminCosman. It is a while since I wrote this code, but I must have assumed something about the ordering. I don't have a strong feeling for the "right" solution....

Hi @BenjaminCosman. Given that combineSrcSpans is out in the wild and I'm not sure how people might be depending on its behaviour and/or performance it is hard to say whether...

Thanks @kootenpv. The README does say that this is a Python interpreter. You use it pretty much in the same was as the standard Python interpreter. What kind of information...

Okay. I'll add something more to explain its purpose. The short answer is you would not normally use blip instead of the standard Python interpreter. I wrote it as a...

Thanks @JackAllTrades-MoN. PR would be appreciated. If possible, please include test cases as well. Cheers!