mygene.info
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biothings
MyGene.info: A BioThings API for gene annotations
The mygene response for https://mygene.info/v3/gene/26774 is missing the genomic_pos field, even though the data exists here: https://www.ncbi.nlm.nih.gov/gene?cmd=retrieve&dopt=default&list_uids=26774 Is this right? Thanks!
There should to be a way to determine where exactly each field within each document comes from. This is necessary to be able to accurately use the data. This can...
Since the genes are indexed by the Entrez ID, it would be helpful in certain cases to retrieve the Entrez genomic position (as well as the ensembl genomic position) especially...
The current gene summary data (`summary` field) from MyGene.info API are extracted from the RefSeq records (see the current [refseq data source](https://github.com/biothings/mygene.info/tree/master/src/hub/dataload/sources/refseq)). It appears that Refseq does not contain all...
Linked Issue: https://github.com/biothings/biothings.api/issues/306
Uniprot.Swiss-Prot for some genes are not available after the recent [update](https://github.com/biothings/mygene.info/issues/140). For example gene `AR`(entrez ID 367) doesn't have uniprot information anymore https://mygene.info/v3/gene/367?fields=uniprot, it should return P10275 in the response....
If it's possible for multiple ensembl values to be returned, then they should always be a list. When using `fields="symbol,ensembl.type_of_gene"` ``` [ { 'query': 'ENSG00000283341', '_id': 'ENSG00000283341', '_version': 1, 'ensembl':...
`ENSG00000210196` ```python gene_client.getgenes(['ENSG00000210196'], fields='symbol') """ [{'query': 'ENSG00000210196', '_id': '4571', '_version': 2, 'symbol': 'TRNP'}] """ ``` `ENSG00000210196.2` ```python gene_client.getgenes(['ENSG00000210196.2'], fields='symbol') """ [{'query': 'ENSG00000210196.2', 'notfound': True}] """ ```