bio_sun

Bug report with oncoplot and its potential cause

5

Bug about the `oncoplot` relying function `createOncoMatrix ` https://github.com/PoisonAlien/maftools/blob/eba7343b6d902f07c747869a315b9bd48b31341d/R/oncoplot.R#L88 When using `oncoplot` with parameter `genes = c("some charactor vector")` and `fill = TRUE` https://github.com/PoisonAlien/maftools/blob/af202ed5a590e87fdcc38b61ec559e8f4d235e11/R/oncomatrix.R#L29 the `levels = g` in this...

Error with demo data when running STEP2

7

I copied test data from example_data folder provided by the neoflow. the input_vcf_list.txt file looks like: ``` experiment sample file file_type crc_test sample1 /neoantigen2/input/sample1.vcf somatic ``` the copied sample1.vcf looks...

### Feature Type - [X] Adding new functionality to pandas - [ ] Changing existing functionality in pandas - [ ] Removing existing functionality in pandas ### Problem Description **New...

**Feature** We Know that mypy and typing now support ```python from typing import TypedDict, Optional, Literal class OverlapsDict(TypedDict): id: int seq_id: int pr_order: int pos1: int seq: str pos2: int...