Raj

No, the crashes (at Hashtable.cpp:96) are always in the mapping phase, and the (apparent) infinite loop is always in the hash building phase.

Hi Guillaume, sorry for delay. I have a 47MB archive I could upload somewhere containing one of multiple example runs that I just confirmed aborts at the Hashtable.cpp:96 assertion. Alternatively,...

Hi Griffan, It was easily reproduced once I regenerated the input FASTQs (extracted from earlier bwa alignments). For what it's worth there is clearly a "theme" of repeat sequences with...

More information: running dragen with a new (different from above) reference and more real data, and again it is emitting impossible coordinates for _the last contig_ in the reference FASTA...