Benjamin Chu

Adjacency-constrained hierarchical clustering?

1

Hello, thank you for the great package. This is a question rather than a bug report. I wonder if this package supports adjacency-constrained clustering? Given distance matrix, I want to...

Pairwise distance with respect to 2 columns of the second matrix

1

I am interested in a funny scenario where given matrices `X` and `Y`, I want to compute ``` euclidean(x, yi, yj) = ||x - yi - yj||^2 ``` for all...

StackOverflowError in BitMatrix * vector multiplication even for n=10

8

I was hoping that this package would work for BitMatrix-vector multiplication, which is not supported by BLAS. However, my code encounters a StackOverflowError error: ```Julia using LoopVectorization using Random function...

how to savefig with dpi=300

7

I created some map images following [these example code](http://juliaplots.org/PlotlyJS.jl/stable/examples/maps/). I was wondering how to save the figure in high resolution (e.g dpi=300)? I tried including `dpi=300` in `Layout`, but it...

Error launching workers: no such file or directory

3

I am running `addprocs_sge` even though my cluster is UGE. Not sure if this is the reason my code isn't working. If I use an interactive node, I can do...

Best way to obtain mcvcf files from vcf files?

3

Hello, I have simulated some of my own reference panels in `vcf` format that I'd like to use as reference panels. I wish to test it on Minimac4, which means...

Best practices for cross-platform relocatable app?

3

I tried posting on [discourse](https://discourse.julialang.org/t/packagecompiler-jl-best-practices-to-create-cross-platform-relocatable-app/105408) but its not getting any attention, so I'm posting here to hopefully get more response. Using `PackageCompiler.jl` I created a relocatable app, which seems to...

Enzyme execution failed on a basic example?

3

Hi community, I am trying to include `Enzyme.jl` to [this benchmark](https://gist.github.com/ForceBru/63a08b62cb4bdf6a6d8bc23924929d48) which compares the speed of `ForwardDiff.jl`, `ReverseDiff.jl`, `Symbolics.jl`, `Zygote.jl` to that of `JAX` for computing the gradient of a...

`stripwhitespace=true` not removing trailing white space?

1

On CSV v0.10.9, reading this file: https://bitbucket.org/nygcresearch/ldetect-data/src/master/EUR/fourier_ls-all.bed with `stripwhitespace=true` doesn't seem to work as intended ``` julia> using CSV, DataFrames julia> df = CSV.read("fourier_ls-all.bed", DataFrame, stripwhitespace=true) julia> df[1, 1] "chr1...