BioNextflow

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deeplexicon produces different demultiplexing results for GPU and CPU mode.

8

For the RNA samples I am running, demultiplexing gives significantly different results. GPU mode results has a lot more unknown assignments and very small number of bc3 barcoded reads. Meanwhile...

adalisan

rpy2 package which is required by tombo's plotting functions is not installed in mopmod singularity images

2

I am trying to use "tombo plot" commands to run plotting functions of ont-tombo 1.5.1 . I am getting a "rpy2 is not installed" error message , and I checked...

adalisan

Allow saving unmapped reads in minimap2 output

1

Hi, I was wondering if there could be an option to include unmapped reads in the output of minimap2? It is currently hardcoded in the samtools view command (the `-F4...

alexamlie

the PARAMS of each BioNextflow object can be different from tool to tool. So it can be good to have an hash with custom parameters and some defined like PARAMS["label"]...

lucacozzuto

Help with pasapipeline params files to run PASA with mysql within Nextflow

2

Hi @toniher I am trying to get PASApipeline with mysql working with Nextflow using docker and in this regard [Abhinav](https://github.com/abhi18av) - @abhi18av suggested I have a look at your implementation....

tamuanand

Here it can be found a list of modules I'm working to migrate to this project. EDGAR **Multiple Sequence Aligners** - [x] Clustal Omega - [ ] MAFFT - [...

edgano