Unusual error messages in the illumina tutorial

[wasade]

Seeing many of these coming from core_diversity_analysis.py:

can't invoke "event" command:  application has been destroyed
    while executing
"event generate $w <<ThemeChanged>>"
    (procedure "ttk::ThemeChanged" line 6)
    invoked from within
"ttk::ThemeChanged"

Capture from the log file below. Using matplotlib 1.4.3. Anyone else seen these? Results appear to be fine, but will be confusing for users.

# Plot Taxonomy Summary command 
plot_taxa_summary.py -i cdout//taxa_plots_SampleType/SampleType_otu_table_sorted_L2.txt,cdout//taxa_plots_SampleType/SampleType_otu_table_sorted_L3.txt,cdout//taxa_plots_SampleType/SampleType_otu_table_sorted_L4.txt,cdout//taxa_plots_SampleType/SampleType_otu_table_sorted_L5.txt,cdout//taxa_plots_SampleType/SampleType_otu_table_sorted_L6.txt -o cdout//taxa_plots_SampleType//taxa_summary_plots/ 

Stdout:

Stderr:
/home/genomics/miniconda2/lib/python2.7/site-packages/matplotlib/collections.py:590: FutureWarning: elementwise comparison failed; returning scalar instead, but in the future will perform elementwise comparison
  if self._edgecolors == str('face'):
can't invoke "event" command:  application has been destroyed
    while executing
"event generate $w <<ThemeChanged>>"
    (procedure "ttk::ThemeChanged" line 6)
    invoked from within
"ttk::ThemeChanged"
can't invoke "event" command:  application has been destroyed
    while executing
"event generate $w <<ThemeChanged>>"
    (procedure "ttk::ThemeChanged" line 6)
    invoked from within
"ttk::ThemeChanged"
can't invoke "event" command:  application has been destroyed
    while executing
"event generate $w <<ThemeChanged>>"
    (procedure "ttk::ThemeChanged" line 6)
    invoked from within
"ttk::ThemeChanged"
can't invoke "event" command:  application has been destroyed
    while executing
"event generate $w <<ThemeChanged>>"
    (procedure "ttk::ThemeChanged" line 6)
    invoked from within
"ttk::ThemeChanged"
can't invoke "event" command:  application has been destroyed
    while executing
"event generate $w <<ThemeChanged>>"
    (procedure "ttk::ThemeChanged" line 6)
    invoked from within
"ttk::ThemeChanged"
can't invoke "event" command:  application has been destroyed
    while executing
"event generate $w <<ThemeChanged>>"
    (procedure "ttk::ThemeChanged" line 6)
    invoked from within
"ttk::ThemeChanged"
can't invoke "event" command:  application has been destroyed
    while executing
"event generate $w <<ThemeChanged>>"
    (procedure "ttk::ThemeChanged" line 6)
    invoked from within
"ttk::ThemeChanged"
can't invoke "event" command:  application has been destroyed
    while executing
"event generate $w <<ThemeChanged>>"
    (procedure "ttk::ThemeChanged" line 6)
    invoked from within
"ttk::ThemeChanged"
```bash

[gregcaporaso]

Weird, I have not seen that. Is this message displaying in the notebooks (if that's what you're using)? And core_diversity_analysis.py does complete successfully?

[wasade]

Yes and yes. Haven't tried via cmdline but not sure how that would change things On Jan 20, 2016 8:56 PM, "Greg Caporaso" [email protected] wrote:

Weird, I have not seen that. Is this message displaying in the notebooks (if that's what you're using)? And core_diversity_analysis.py does complete successfully?

— Reply to this email directly or view it on GitHub https://github.com/biocore/qiime/issues/2125#issuecomment-173341464.

[gregcaporaso]

Ok, thanks. I don't get it locally, so I think it must be something with that environment. Is this the same image you're using for #2123?

[wasade]

Ya, can't imagine what else it would be except matplotlib. On Jan 20, 2016 9:14 PM, "Greg Caporaso" [email protected] wrote:

Ok, thanks. I don't get it locally, so I think it must be something with that environment. Is this the same image you're using for #2123 https://github.com/biocore/qiime/issues/2123?

— Reply to this email directly or view it on GitHub https://github.com/biocore/qiime/issues/2125#issuecomment-173346785.

[imkrish7]

whats the meaning of that can anyone explain

[ElDeveloper]

These are likely errors related to the plotting backend, so this shouldn't be a problem.