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compare_alpha_diversity.py p-value return
I propose that compare_alpha_diversity.py
should follow the format of group_significance.py
in returning uncorrected AND corrected p-values. Currently, the return looks like (tab separated):
Group1 Group2 Group1 mean Group1 std Group2 mean Group2 std t stat p-value
and I propose to change this to:
Group1 Group2 Group1 mean Group1 std Group2 mean Group2 std t stat p-value FDR p-value bonferroni p-value
This would make it consistent with group_significance.py
and would alleviate a small number of questions on the forum.
:+1:
Note that this change, if made, may or may not make it into a release as QIIME 1.9.2 is only planned if we need to do a bug fix release.