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error on assign_taxonomy.py

Open wentyqq opened this issue 8 years ago • 2 comments

I did the taxonomy assignment using local RDP database,but encountered the following error. The sad thing is I am not familiar with python script. Can Someone help me!

Traceback (most recent call last): File "/usr/local/bin/assign_taxonomy.py", line 5, in pkg_resources.run_script('qiime==1.9.0', 'assign_taxonomy.py') File "/usr/local/lib/python2.7/dist-packages/distribute-0.6.10-py2.7.egg/pkg_resources.py", line 461, in run_script self.require(requires)[0].run_script(script_name, ns) File "/usr/local/lib/python2.7/dist-packages/distribute-0.6.10-py2.7.egg/pkg_resources.py", line 1194, in run_script execfile(script_filename, namespace, namespace) File "/usr/local/lib/python2.7/dist-packages/qiime-1.9.0-py2.7.egg/EGG-INFO/scripts/assign_taxonomy.py", line 417, in main() File "/usr/local/lib/python2.7/dist-packages/qiime-1.9.0-py2.7.egg/EGG-INFO/scripts/assign_taxonomy.py", line 394, in main log_path=log_path) File "/usr/local/lib/python2.7/dist-packages/qiime-1.9.0-py2.7.egg/qiime/assign_taxonomy.py", line 859, in call max_memory=max_memory, tmp_dir=tmp_dir) File "/usr/local/lib/python2.7/dist-packages/bfillings/rdp_classifier.py", line 515, in train_rdp_classifier_and_assign_taxonomy tmp_dir=tmp_dir) File "/usr/local/lib/python2.7/dist-packages/bfillings/rdp_classifier.py", line 485, in train_rdp_classifier return app(training_seqs_file) File "/usr/local/lib/python2.7/dist-packages/bfillings/rdp_classifier.py", line 327, in call remove_tmp=remove_tmp) File "/usr/local/lib/python2.7/dist-packages/burrito-0.9.0-py2.7.egg/burrito/util.py", line 284, in call 'StdErr:\n%s\n' % open(errfile).read()) burrito.util.ApplicationError: Unacceptable application exit status: 1

wentyqq avatar Jul 16 '15 02:07 wentyqq

Did this ever get answered? I'm getting a similar error and am not sure how to proceed!

drish91 avatar Mar 30 '18 21:03 drish91

Did this ever get answered? I'm getting a similar error and am not sure how to proceed!

zhaov1 avatar Apr 22 '23 08:04 zhaov1