I did the taxonomy assignment using local RDP database,but encountered the following error. The sad thing is I am not familiar with python script. Can Someone help me!
Traceback (most recent call last):
File "/usr/local/bin/assign_taxonomy.py", line 5, in
pkg_resources.run_script('qiime==1.9.0', 'assign_taxonomy.py')
File "/usr/local/lib/python2.7/dist-packages/distribute-0.6.10-py2.7.egg/pkg_resources.py", line 461, in run_script
self.require(requires)[0].run_script(script_name, ns)
File "/usr/local/lib/python2.7/dist-packages/distribute-0.6.10-py2.7.egg/pkg_resources.py", line 1194, in run_script
execfile(script_filename, namespace, namespace)
File "/usr/local/lib/python2.7/dist-packages/qiime-1.9.0-py2.7.egg/EGG-INFO/scripts/assign_taxonomy.py", line 417, in
main()
File "/usr/local/lib/python2.7/dist-packages/qiime-1.9.0-py2.7.egg/EGG-INFO/scripts/assign_taxonomy.py", line 394, in main
log_path=log_path)
File "/usr/local/lib/python2.7/dist-packages/qiime-1.9.0-py2.7.egg/qiime/assign_taxonomy.py", line 859, in call
max_memory=max_memory, tmp_dir=tmp_dir)
File "/usr/local/lib/python2.7/dist-packages/bfillings/rdp_classifier.py", line 515, in train_rdp_classifier_and_assign_taxonomy
tmp_dir=tmp_dir)
File "/usr/local/lib/python2.7/dist-packages/bfillings/rdp_classifier.py", line 485, in train_rdp_classifier
return app(training_seqs_file)
File "/usr/local/lib/python2.7/dist-packages/bfillings/rdp_classifier.py", line 327, in call
remove_tmp=remove_tmp)
File "/usr/local/lib/python2.7/dist-packages/burrito-0.9.0-py2.7.egg/burrito/util.py", line 284, in call
'StdErr:\n%s\n' % open(errfile).read())
burrito.util.ApplicationError: Unacceptable application exit status: 1
Did this ever get answered? I'm getting a similar error and am not sure how to proceed!
Did this ever get answered? I'm getting a similar error and am not sure how to proceed!