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Renaming clades

Open mortonjt opened this issue 4 years ago • 1 comments

Right now, the y_i renaming of internal nodes is a bit jarring. Perhaps we should enable renaming of only internal nodes that don't have names with something like clade_i.

The one thing to watch out for is internal node duplicates generated from tax2tree.

mortonjt avatar Apr 12 '21 15:04 mortonjt

One final comment

  1. This function will be compatible with the output of tax2tree that will enable annotation of internal nodes
  2. This function will eventually deprecate rename_internal_nodes

mortonjt avatar Apr 12 '21 18:04 mortonjt