gneiss
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Balance test
One thing that could be useful is a very simple command that allows for a balance test.
It would look something like this
- Bootstrap the samples (via multinomial sampling)
- Select microbes for numerator / denominator (user specified)
- Run statistical test and count up the occurrences to calculate CI and pvalues.
Now that microbes can be directly selected from qurro, this should be easier to implement. CC @fedarko
Relevant issue https://github.com/biocore/qurro/issues/222
This is the paper worth citing for this : https://www.biorxiv.org/content/10.1101/134536v2