gemelli
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Qiime2 Version - not able to do multiple states
Working on doing CTF using the qiime2 CLI, but got an error I don't quite understand.
!qiime gemelli ctf \
--i-table ../data/Microbiome/pool_filtered/RPCA/gemelli_filtered.qza \
--m-sample-metadata-file ../data/Microbiome/14577_fixed.txt \
--m-feature-metadata-file ../../shotgun_scripts/woltka_v2_taxonomy.qza \
--p-state-column timepoint_number \
--p-state-column timepoint_group \
--p-individual-id-column marmoset_id \
--output-dir ../data/Microbiome/pool_filtered/ctf-results
Error: (1/1?) Option '--p-state-column' was specified multiple times in the command.
But...
--p-state-column TEXT Metadata column containing state (e.g.,Time,
BodySite) across which samples are paired. At least
one is required but up to four are allowed by other
state inputs. [required]
So how do I specify more than one state?
--p-state-column timepoint_number,timepoint_group \
also did not work.
@gibsramen dug into this a bit, but sounds like it might not actually allow multiple states