uta
uta copied to clipboard
biocommons
UTA should use cigar strings from NCBI's gff files whenever possible
In ~May 2015, NCBI started releasing transcript alignment files with cigar strings. UTA predates these files, and still uses uta_align for alignments.
For the future overhaul, UTA should use cigar strings from NCBI when available. It may have to resort to uta_align in other transcripts, so recording provenance will remain critical.
This issue is stale because it has been open 30 days with no activity. Remove stale label or comment or this will be closed in 7 days.
![github-actions[bot] avatar](https://avatars.githubusercontent.com/in/15368?v=4 "Published by a pub.dev verified publisher"){kind=small}
This issue was closed because it has been stalled for 7 days with no activity.
This issue was closed by stalebot. It has been reopened to give more time for community review. See biocommons coding guidelines for stale issue and pull request policies. This resurrection is expected to be a one-time event.
This issue is stale because it has been open 90 days with no activity. Remove stale label or comment or this will be closed in 7 days.
This issue was closed because it has been stalled for 7 days with no activity.