biochristmas

The issue of matching between the expanded GTF and transcript types

2

Hi, I aligned the transcript to the reference genome, and based on the coverage of reads, I found two alternative splicing events. However, the GTF file expanded by IsoQuant shows...

Transcript quantification results are inconsistent

3

Hi, I ran this command to perform Isoquant quantification with the aim of obtaining transcript quantification results for all samples: isoquant.py --reference genome.fa --genedb ./merge.combined.gtf --fastq CK.derRNA.fastq T1.derRNA.fastq T2.derRNA.fastq --data_type...

No matching distribution found for cuequivariance-ops-cu12>=0.5.0; sys_platform == "linux"

4

Hi, I encountered the following error during installation. Could you please advise me on how to resolve it? pip install -e . Obtaining file:///share/home/mark/software/modelforge Installing build dependencies ... done Checking...

Database . does not exist

7

Hi, I'm encountering an issue while trying to run colabfold_search. I would appreciate any suggestions you might have for resolving it. Thank you in advance! “colabfold_search test.fasta ./colabfold_db/ test --af3-json...