biochem_fan

I see. I will discuss with @scheres.

Or edit `optimiser.star` so that it points to half maps masked by a 3D spherical mask (which can be created by `relion_mask_create`).

I added `softMaskOutsideMap()` to `relion_project`. A spherical mask (r = 45px) touching the box (90 px wide) is still too wide.  A smaller mask (r = 30 px) is...

I thought I fixed this issue at some point in 3.0.x. I am surprised to see this happening in 3.1.0. Now this is harder to debug, because this does not...

> at a facility, where I cannot easily recompile myself You don't need root permission to compile RELION.

Is this running over multiple nodes?

We do plan to refactor the scratch system as it has many problems (e.g. #494). I am afraid to say I might not be able to fix your problem until...

Does this cause any problems?

Specify `rlnClassNumber` (or whatever an integer column name) to the `MetaDataLabel for color`. Leave `STAR with the color label` empty. After colorful picking, extract particles and perform Subset selection with...

While investigating this, I realized that this mode has other issues (assuming all movies have the same number of frames; using NSIZE without checking ZSIZE). I would like to get...