Ben Johnson

Adding new scRNA-seq technology to salmon alevin

5

Hello salmon team! @jamorrison and I were looking through the code and seeing how best we could contribute a new single-cell RNA-seq technology. Our approach (STORM-seq https://www.biorxiv.org/content/10.1101/2022.03.14.484332v3) has made use...

Adding support for STORM-seq.

Uninitalized value error post PE parsing

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When I run RetroSeq in the align mode, it gets to PE alignment parsing and then breaks. Not sure what the error means (uninitialized value before assignment?). Input: perl bin/retroseq.pl...

Error with isnan during compilation

4

Using the cmake route of installation, I encountered an error during the: ``` cmake --build . --config Release ``` It would get about 90% of the way there and then...

Hi all, Polaris is an amazing project. Thank you for doing this! We have been developing a set of references to use with our structural variant calling from WGBS using...