MOFA2

MOFA2 copied to clipboard

`Installation paths not writeable, unable to update packages`

6

This only seems to an issue when I try to install MOFA2 within a Docker container (using my local Rstudio installation works fine). Though the Docker container has Bioc v3.16...

bschilder

create_mofa issue with different number of samples in different data types

1

Hi, I am trying to create a mofa object with a list of matrices and I am getting the below error. `MOFAobject

clersdom

Hi, I have been playing with MOFA and MEFISTO, and I found some inconsistency in the way the feature weights are scaled when using the function `get_weights()`. Here is a...

oliviaAB

I have been working on creating a Docker image that allows to run MOFA2 in GPU mode. Here's the modified Dockerfile that can be used to create the image ```...

frederikziebell

The documentation of `plot_factors()` says _a vector of length two with the factors to plot. Factors can be specified either as a characters_. I'd suggest to change it to _a...

frederikziebell

How do I calculate one explained-variance value for each factor?

2

Hello, I am able to calculate the explained variance for each factor and dataset/view. But I am unable to find a way to calculate one variance value for each factor...

ravipatel4

Truncation of very long features names can lose uniqueness

2

Here's an example ``` file

frederikziebell

Error in run_enrichment. feature.sets has to be a list or a binary matrix.

1

Hi, when I run scripts as belows: gsea.positive

jiangfuqing

matrix.please function not found

3

Hi, when I run scripts as belows: " msgidb.matrix % as.data.table %>% .[,id:=1] %>% dcast(gs_name~gene_symbol, value.var="id", fill=0) %>% matrix.please " I got an error: " Error in matrix.please(.) : could...

jiangfuqing

Using multiple metadata as groups?

1

Does MOFA2 support multiple factors as groups? So, for instance, if I have a Seurat object where I have cells from two different lines and with or without treatment. These...

nicolaromano