vcfpy
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bihealth
Python 3 library with good support for both reading and writing VCF
added conditional to allow reading directly from .bgz file types.
* vcfpy version: 0.13.3 * Python version: 3.6.1 * Operating System: Linux (Ubuntu) ### Description I'm having a hard time understanding why there is a mapping of escape characters, because...
* vcfpy version: 0.13.2 * Python version: 3.6.9 64bit [GCC 8.4.0] * Operating System: Linux 4.15.0 1093 oem x86_64 with Ubuntu 18.04 bionic ### Description When I fetch variants by...
* vcfpy version: 0.12.1 * Python version: 3.6.3 * Operating System: ubuntu 18.04 ### Description I need to subset samples from a large VCF with approximately 100.000 samples. As the...
* vcfpy version: 0.13.4 * Python version: 3.10.4 * Operating System: Linux (Ubuntu 22.04) ### Description Try to install and use vcfpy. Install successful, use failed. I think requirements are...
Bumps [black](https://github.com/psf/black) from 22.3.0 to 24.3.0. Release notes Sourced from black's releases. 24.3.0 Highlights This release is a milestone: it fixes Black's first CVE security vulnerability. If you run Black...
![dependabot[bot] avatar](https://avatars.githubusercontent.com/in/29110?v=4 "dependabot[bot] avatar"){kind=avatar}
The change made escapes equal sign (`=`) in INFO fields. However, the column characters `:` are also escaped on output, as recommended by the [vcf 4.3 format](https://samtools.github.io/hts-specs/VCFv4.3.pdf). It is unclear...
* vcfpy version: 0.13.6 * Python version: 3.10.13 * Operating System: Rocky Linux 8.7 (Green Obsidian), Linux 4.18.0-348.2.1.el8_5.x86_64 ### Description Escaping the equal sign `=` in INFO fields is lost...
I'm using vcfpy to add an extra field in FORMAT of each record of a multisamples vcf file. From the document, i think that the function add_format would help me...
* vcfpy version: vcfpy 0.13.6 * Python version: 3.8.5 * Operating System: Linux ### Description I want to add self defined Filter into my vcf column (such as LowQual etc)...
