biomedical

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## Adding a Dataset - **Name:** *MentSum* - **Description:** *A Resource for Exploring Summarization of Mental Health Online Posts* - **Task:** *Text to Text* - **Paper:** *[link to the dataset...

sg-wbi

Sometimes it's more convenient to load files locally than to download them repeatedly (especially large files). If the `data_dir` argument is provided on instantiation, it should override the URL download...

jason-fries

Potential Authorship Contributions

7

Hi @GullyBurns and @tonifuc3m! Thanks for contributing to the hackathon! Currently, we will only _acknowledge_ participants who have implemented < 3 datasets. Would you be willing to implement 2 more...

rosalinesway

Multiple kb entities are created when one would do b/c entity type is not a list

2

## Describe the bug Medmentions can have multiple entries with the same span/text/type, yet different normalisation terms ## Steps to reproduce the bug ```python def conflicting_normalisation(row): span_to_entity = {} for...

CallumMcMahon

Create dataset loader for CASI (Clinical Abbreviation Sense Inventory)

1

## Adding a Dataset - **Name:** *CASI (Clinical Abbreviation Sense Inventory)* - **Description:** *For our comprehensive sense inventory for clinical abbreviations and acronyms, a total of 440 most frequently used...

jason-fries

Closes #42

3

**Finished data loader for source schema only, because the Bigbio KB schema does not currently support all features that exist in the source data - per conversation with @jason-fries** -...

alisoncallahan

Extend #534. > Can we add in the `tests` case one for every sub function? This should be > - passage offsets > - entity offsets > - event offsets...

sg-wbi

WIP script to process a static json metadata file

1

@galtay this is the script (WIP) as a reference for parsing metadata from a static file

ruisi-su

## Adding a Dataset - **Name:** *RuMedNLI* - **Description:** *There is a shortage of text medical resources for the Russian language. This is a substantial obstacle in state-of-the-art NLP deep...

jason-fries

Closes #427

4

Closes #427 Dataset contains 8 different subset_id's (different dataset settings), each with a `bigbio` and `source` schema. Furthermore there is an subset called `mediqa_ans_all` which includes all data (articles, sections,...

nomisto