bids-specification

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[SCHEMA] make schemacode into bids-schema (bids_schema pkg)

2

#892 made the main work to detach schema handling code into an installable python package. https://github.com/bids-standard/bids-specification/pull/892/files#diff-fca7304d24a5898ab105cce4ccd5a21761e7673dbeccb692b65bc6cddef9eee7R3 lists https://github.com/bids-standard/schemacode and setup.py https://github.com/bids-standard/bids-specification/pull/892/files#diff-a2a4329d57cbccf54036da2be45bf77cf3059065fb0e856244f86d05394e3082R17 lists it as `"schemacode" . I think eventually, whenever...

yarikoptic

[SCHEMA] Use mkdocs-gen-files to generate the glossary

2

Closes None, but this should help move us forward on #954.

tsalo

SCHEMA: satellite (.overwrite.nwb) file for the base file (.nwb)

4

to overcome possible overlap between ".json is the side car file" and ".json is the 'path' file" for nwb (see https://github.com/hdmf-dev/hdmf/pull/677#issuecomment-1085292384) the idea is to not just use `.json` but...

yarikoptic

[ENH] add _proc-<label> to all modalities having _rec (anat, fmap, func, perf, and pet)

44

Initially I thought also to introduce it to behavioral data as well, since IMHO it potentially could be applicable whenever hardware might already be producing multiple files, e.g. where physio...

yarikoptic

SCHEMA: Expression syntax

15

In order to express many rules that are found in BIDS, it's necessary to be able to evaluate arithmetic and logical expressions on arrays and objects (or their equivalents in...

effigies

Along with the increasing complexity of the schema, we're going to need some clear implementation guidelines. We noted in the schema sprint documents, that we need clear test for determining...

effigies

Removing leading period from YAML extensions?

10

I was wondering whether there is a specific reason for having the extensions recorded with a leading period in the YAML schema data. Maybe the leading period should be inserted...

TheChymera

[SCHEMA] use the schema to organize the schema

2

Occurred to me that the rule files that describes each datatypes list the entities for each suffix group in an order that seems arbitrary. See for example: https://github.com/bids-standard/bids-specification/blob/master/src/schema/rules/datatypes/anat.yaml There is...

Remi-Gau

[SCHEMA] Reorganize how datatypes and suffixes are represented in loaded objects

2

Closes None, but continues from discussion in this week's schema/validator meeting. I'm going to leave this as a draft, because I want to know if folks think this reorganization is...

tsalo

[SCHEMA] Add full object definitions for valid values in schema

4

Closes #904. This PR adds new information to the schema, but should not affect how it is render in the specification. Changes proposed: - Convert certain valid values (enums) in...

tsalo