bhinderb

Hi - I have some amplicon (with UMI) data (ultra high depth for targeted regions) which I preprocessed with fastp, aligned and now running gencore to dedup. The files have...

I have run TITAN using the snakemake on human hg19 cases in the past. I want to run it on mouse mm10 samples so wondering if TITAN can be run...

mRNA_cell value unknown for some cell types: CAFs, Endothelial...

1

Hi - I get a warning message when running EPIC (input dataset is TCGA RNAseq FPKM). Please advise on a resolution. Warning message: In EPIC(bulk = bulkSamplesMatrix) : mRNA_cell value...