bhdobrin

Thank you for the very prompt reply. Since I posted my comment, I ran the famdb.py command on my organization's RepeatMasker installation path (previously I ran it locally, on my...

Responding again to JMStorer. I am sorry, are you one of the repository owners? Are you another user? Were you trying to advise me on a course of action, or...

Reponding to JMStorer: Thank you. Running famdb.py on RepeatMaskerLib.h5 shows that that database, too, is empty of contents below the root level. (Output looks identical to the Dfam.h5 output.) However,...

Hi Dr. Hubley, Thank you for replying. I suppose I misread this paragraph:  It is possible to read "for newer versions of RepBase" as "At present",...

Yes, for me the keys to make it work were: 1)use the -engine ncbi flag as in Dr. Hubley's recommendation above. This is apparently the engine suited to a flat...