Bhavay Aggarwal

Hello, I wanted to perform NN search on a dataset of genomes. For this task, the distance between 2 datapoints is calculated by a custom script? Is there I can...

Custom Metric

3

Hello, I wanted to perform NN on a dataset of genomes. For this task, the distance between 2 datapoints is calculated by a custom script? Is there I can incorporate...

Using Custom Distance

3

Hello, I wanted to perform NN search on a dataset of genomes. For this task, the distance between 2 datapoints is calculated by a custom script? I looked at the...

Index Error

1

Hello, I followed the documentation and converted my data files accordingly but i get the following error ``` mp = predictor.predict_batch(test_data) File "/home/bhavay18384/.conda/envs/myenv/lib/python3.7/site-packages/fast_bert/prediction.py"$ return self.learner.predict_batch(texts) File "/home/bhavay18384/.conda/envs/myenv/lib/python3.7/site-packages/fast_bert/learner_cls.py$ outputs = self.model(**inputs)...

String Data

6

Hello, How can i input string data to add_items? I have implemented a custom distance function to use with these strings and have made changes so that it accepts string...

DCD files

1

CAn i use this to generate dcd file from a pdb file? if so can you please provide the code or if not guide me on how to do so?

Explanation

1

Hello, Is there any explanation of the use case and importance of the various protein feature which can be calculated like EAAC, DDE, etc?

Hello, Is there any steps on how to use any pretrained model to generate representations for SMILES strings