bhagavadgitadu22

Suprising gRsqr calculation in neutral.fit

1

Hello, I am using the neutral.fit function and I was surprised by the gRsqr results I was getting: they were not sustaining the visual impression I had of the fit....

High discrepancy between the high amount of viruses for geNomad and the low number of complete viruses

5

Hello, I am currently struggling with metagenomes obtained from environmental biofilms (river rocks). I have 50 metagenomes but I obtain only 100 checkV high-quality viruses. I would expect a lot...

Can I rely on temporal dynamics with predicted minimal doubling time about 5 hours?

1

I am working on metagenomes from river biofilms (average temperature of the river about 10 degrees). I have 6 samples (5 to 10) that were sampled every few days from...

Interrogation regarding overlap-based assemblers

1

Thank you for the great tool! I am using MEGAHIT+VIBRANT+COBRA to get about 35 high-quality phages from each of my metagenomes after validation by CheckV. I just tested the new...