bgb-ipl

Thank you for your quick answer. Indeed if the HDS do not take the LD into account, the proposed formula is thus not correct. Best,

1. Ok, so that's why we get 0 for both if we mix TOP and BOT in the same vcf file. 2. Sorry, the question was confusing. For example, if...

I agree with @maegsul, a way of providing known TOP/BOT information (from Illumina manifest or info field information for example) could be useful to fixref. Another point, when testing some...

Hi, I don't really see what do you mean by "real world data" : is it related to the comment about integrating Illumina manifest information on TOP/BOT or about the...

I can't provide any real data but you can search https://my.pgp-hms.org/public_genetic_data for publicly available data and then use the Illumina manifest file of the link provided by @maegsul. I think...