bganglia

Do the red arrows on some images create a danger for data leakage?

3

It just occurred to me that arrows only occur on images with a positive diagnosis, so this could cause data leakage. That might not be as much of problem if...

Automate finding radiographs in academic papers

3

I have a project to automatically search for, download, and extract radiographs from papers on a given disease. Right now everything works except filtering the radiographs from the other figures,...

Double-check metadata for accuracy/completeness

1

I will be starting to revisit the papers and double-check the metadata for accuracy and completeness. I will keep track of my progress using this issue.

Tarfiles

2

This pull request adds support for opening from tarfiles, zipfiles, and folders with any combination of tarfiles and/or zipfiles, whether in DICOM format or regular image formats such as PNG,...

Guide on Contributing to the Biopython Tutorial

4

Right now, it is hard to write content for the Biopython Tutorial because there is not much documentation on the tools and conventions used. I can work on adding some...

Wrap SCOP2 REST API

6

This pull request addresses issue #2508 It adds 1. A wrapper for the new SCOP2 REST API. The JSON objects given by the server are returned to the user as...

The error string should show how to set the email correctly.

Test cache performance with larger amounts of data

5

This issue has been separated from #18 It may be necessary to revise the way the cache saves data to be higher-performance. It would still be necessary to append and...

Handle connection errors in cache?

8

Failed requests should not be saved. A report should be generated with the DOIs that have led to failed requests. This was raised as part of the discussion in issue...

Links like https://doi.org/10.1016/j.jns.2020.116832 do not lead directly to a PDF - they go through HTML first. This leads to failures when loading PDF handles / saving PDF files. This was...