Matthew Berkeley

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icon location Geneva, Switzerland

Results 5 comments of Matthew Berkeley

PP::ProfileReadError while using `fastBlockSearch` and `augustus --proteinprofile`

I have the same problem with the conda installation of Augustus. My command is `augustus --codingseq=1 --proteinprofile=28538at7147.prfl --predictionStart=18091799 --predictionEnd=18101912 --species=fly NT_033777.3.temp` and the error is ``` augustus: ERROR PP::Profile: Error...

PP::ProfileReadError while using `fastBlockSearch` and `augustus --proteinprofile`

The error above is also being reported by BUSCO users: https://gitlab.com/ezlab/busco/-/issues/584

PP::ProfileReadError while using `fastBlockSearch` and `augustus --proteinprofile`

Yes the Github version seems to be fine, but the Bioconda version is causing problems for BUSCO. Most users use either the Conda or Docker distributions of BUSCO and both...

PP::ProfileReadError while using `fastBlockSearch` and `augustus --proteinprofile`

Thanks for addressing this issue! Can you make a new conda build with this fix?

Error in MetaEuk during BUSCO run

You may be right - it could be a Docker on Mac issue. I have been unable to replicate it, and no other users have reported it. I had assumed...