Ben Sherman

Results 297 comments of Ben Sherman

I will try nf-core/sarek with kuberun when I get a chance this week. But I understand the problem you describe. I don't think your general solution of injecting an arbitrary...

Ah, I haven't played with that feature in Tower, so I'll have to look at it and see how it might be imitated in Nextflow itself. But also, if you're...

I finally was able to spin up a GKE cluster and test the sarek pipeline. It fails with kuberun as you say, but I was able to get around kuberun...

Eventually I'd like to study how `kuberun` works under the hood, but I think the problem is that `kuberun` resolves the nextflow config prematurely, which is why implicit variables and...

See also https://github.com/nextflow-io/nextflow/issues/870#issuecomment-441100071

I will review this today. But is this PR only for updating the process page? Making the docs DSL2-first will probably require a few edits to other pages, and maybe...

There are still some changes missing, so I will add them directly rather than through a review.

@pditommaso Trying to wrap up my changes this morning. A few questions: 1. Regarding `Channel` vs `channel`, should the docs prefer one over the other? I think we should stick...

Thanks for the reminder @samuell , I will make sure to review the getting started page as well. This PR should update all pipeline examples in the docs to DSL2.

@pditommaso I can't request your review since you started this PR, but it's ready to merge. I will spin off the `tap` question into a separate issue.