Benjamin Ostendorf issues

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                                            Benjamin Ostendorf

GDCdownload fails with "tar: unrecognized archive format"

Hi Tiago, my previously working script to download RNAseq expression data from GDC fails with the error message "`tar: unrecognized archive format`". I tried downloading with `method` set to `client`,...

Export PARStore record to markdown

I was wondering whether you might have a script to export PARStore records to text/markdown files that you would kindly share? I'm using Findingsapp, which unfortunately is no longer maintained,...

`Align` step fails with `could not open input file /geneInfo.tab`

I have deployed the latest version of this workflow (v2.1.2) and only adjusted the config files. I use the ENSEMBL GRCm38 mouse reference genome (release 102). Unfortunately, the mapping step...