sonLib issues

'make all' warning & 'make test' error: invalid syntax

2

Hi all, I'm having an issue with 'make all' and make test. I'm using a lua system to load modules. **Commands:** git clone https://github.com/benedictpaten/sonLib.git cd sonLib module use -a /projects/academic/vaalbert/modulefiles/Allluas...

sjfleck

compile problem: comparison between pointer and zero character constant [-Wpointer-compare]

6

Hi, When I compile the C files, I get such warnings: ``` /root/miniconda3/bin/x86_64-conda-linux-gnu-cc -std=c99 -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem /root/miniconda3/include -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I../externalTools/quicktree_1.1/include/ -march=nocona -mtune=haswell -ftree-vectorize -fPIC...

taoqxtaozi

Python3

1

Switch to Python3

mr-c

improve usage of build flags

1

This helps Debian enable build hardening

mr-c

Enable cross building

1

mr-c

make test error

10

Get this error with make test. Also python can't find the modules. .../bin/sh: 1: sonLib_kvDatabaseTest: not found E/bin/sh: 1: sonLibTests: not found # E ERROR: testFastaReadWriteC (bioioTest.TestCase) ## Tests consistency...

tallnuttcsiro