'make all' warning & 'make test' error: invalid syntax

[sjfleck]

Hi all, I'm having an issue with 'make all' and make test. I'm using a lua system to load modules.

Commands: git clone https://github.com/benedictpaten/sonLib.git cd sonLib module use -a /projects/academic/vaalbert/modulefiles/Allluas module load anaconda3 module load sonLib make all make test

Selected output from 'make all': gcc -std=c99 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I../externalTools/quicktree_1.1/include/ -I inc -I ../lib/ -c impl/.c impl/sonLibList.c: In function ‘st_list_sortP’: impl/sonLibList.c:258:13: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] return ((int ()(const void *, const void ))fn)(((char **)a), *((char **)b)); ^ impl/sonLibList.c: In function ‘stList_sort’: impl/sonLibList.c:262:76: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] sort_r(list->list, stList_length(list), sizeof(void *), st_list_sortP, (void *)cmpFn); ^ impl/sonLibList.c: In function ‘st_list_sort2P’: impl/sonLibList.c:267:56: warning: ISO C forbids conversion of object pointer to function pointer type [-Wpedantic] int (*cmpFn)(const void *, const void *, void ) = (int ()(const void *, const void *, void *))(((void **)extra)[0]); ^ impl/sonLibList.c: In function ‘stList_sort2’: impl/sonLibList.c:273:24: warning: ISO C forbids conversion of function pointer to object pointer type [-Wpedantic] void *extra[2] = { (void *)cmpFn, (void *)extraArg };

Selected output from 'make test': PYTHONPATH=.. PATH=../../bin:$PATH python allTests.py --testLength=SHORT --logLevel=CRITICAL Traceback (most recent call last): File "allTests.py", line 8, in import bioioTest File "/projects/academic/vaalbert/modulefiles/sonLib/bioioTest.py", line 69 print "Got %s levels, %s fileNo and %s maxTempFiles" % (levels, fileNo, maxTempFiles) ^ SyntaxError: invalid syntax make: *** [test] Error 1

Any help with this issue would be greatly appreciated. Thank you! -Steve

[xzk-fd]

Did you settle the problem, I meet the same problem , could you give me some help?

[glennhickey]

Please see: https://github.com/benedictpaten/sonLib/issues/47#issuecomment-1040357357