benedict909

icon indicating a website link benedict909.github.io

icon company MDC-Berlin icon location Berlin, DE icon location Computational PhD student in the Sanders lab at the MDC-Berlin studying somatic mutations in single cells. See my CV at the link below.

Results 7 comments of benedict909

Providing input file for software

Hi, Sorry there is no specific function for this in the package. If you have a file like the example [here](https://en.wikipedia.org/wiki/Variant_Call_Format), you should just be able to remove the header...

Calculating ntot for your software

Hello, Thanks for getting in touch, sorry for not getting back to you sooner! ntot is simply the sum of the minor and major allele copy number. More information on...

emergency!!!!!deconvolution_fit() failed from recursive default argument reference

Hello, I think this error normally occurs when you give a function argument a variable of the same name (e.g. `deconvolution_fit(input_matrices = input_matrices)`. Maybe you could check you haven't done...

error in DBS & ID denovo signatures extract

Hi, Thanks for reporting this, as you say it seems to be a common issue. If you would be able to answer the following questions, hopefully I can try and...

Small changes to file paths

fix error #63

Page numbering?

I would also like to see this added! Benedict

compare_results() not working. "`template` must have a `names` attribute."

Dear all, Firstly thank you for using Palimpsest! I have just encountered this error for the first time, as @subashani01 suggests this seems to be an error that occurs with...