beginner984

Sorry what you mean by `file.type has empty characters in the end` ? Thank you

Thank you. In INDEL file there is not normal INFO I noticed in some cases the frequency is above 100% or 1, is this because there is more information in...

Thank you so much I have converted the pdf from natural history to powerpoint like this [Duplication_timing.pdf](https://github.com/FunGeST/Palimpsest/files/5466811/Duplication_timing.pdf) If for instance, I am interested in peak `8q`, from which part of...

Thank you @FunGeST @jayendrashinde91 that worked As this part needs `bedtools` and I could not install `bedtools` on my laptop, I therefore used our cluster computing nodes to get the...

Sorry People say that options(bitmapType='cairo') would fix the problem but I am not sure where I should add this line ti the R script I have load Cairo R package...

From heart thank you very much to answer me because I really need help My variant caller has been `Strelka` and copy number caller `SCAT` For `LogR` I have just...

Thanks for answering me Unfortunately I do not know this Sorry

``` fi1d18@RBGO-Server2:/data/Continuum/Angel/scRNA-seq/FASTQ$ head PN0340_0001_GEX_S3_L001_I1_001.fastq.gz ����7o1H1dn��Eyc��~�Gq �ޢ�r���?ऩk>��"4�B�Ͽ�������������_������sZF��oJ�_������������|�������׷�����o���۟�M��JcK����d���1�-w��K�m�=j�M�g*

Thanks a lot Sorry, shall I trim the adaptor from each fastq file before feeding that in your software? Let's say the fastq files from `10X Genomics Next GEM Single...

Thanks a lot In `*_barcode_report.tsv` what is the difference between amino acids in `chain1` and `chain2` `(secondary_chain1 secondary_chain2) `columns please?