Bob Dröge

"Operation not permitted" in Singularity containers

16

I'm trying to make use of fuse-overlayfs inside a Singularity container (based on CentOS 7) by using its new `--fusemount `option. Ideally I want to use this to make a...

{bio}[foss/2021b] GetOrganelle v1.7.6.1 w/ Python 3.9.6

10

(created using `eb --new-pr`)

Add OpenSSL (os) dependency to DCMTK easyconfigs

11

Fixes #14455 by adding OS dependencies on OpenSSL for the older DCMTK versions, and an explicit dependency on OpenSSL for the newest DCMTK.

This PR fixes an issue in execute_programs.pm, which has a call to append_str_2_file with the parameters in the wrong order: append_str_2_file($info_string,$configHash->{'versions_file'}); It should be: append_str_2_file($configHash->{'versions_file'},$info_string);

`HwyBlockwiseShiftTest.TestAllShiftRightLanes` test failing on Graviton3

7

I'm trying to compile Highway 1.0.3 with [EasyBuild](https://easybuild.io) using the following recipe: https://github.com/easybuilders/easybuild-easyconfigs/blob/develop/easybuild/easyconfigs/h/Highway/Highway-1.0.3-GCCcore-12.2.0.eb. The build completes without any issues, but one test is failing: ``` 211/658 Test #211: HwyBlockwiseShiftTestGroup/HwyBlockwiseShiftTest.TestAllShiftRightLanes/SVE_256 #...

Application works with `UCX_LOG_LEVEL=info` (or more verbose levels), but hangs otherwise

6

### Describe the bug I'm running into a weird issue on one particular system where importing the Python interface of [waLBerla](https://walberla.net/), which I compiled from source using [EasyBuild](https://easybuild.io/), hangs: ```...

{bio}[foss/2023a] GROMACS v2023.4

15

(created using `eb --new-pr`)

avoid warnings being treated as errors when installing imkl-FFTW with Intel OneAPI compilers and RPATH linking

7

Fixes #2910.

RPATH issue with cdft wrappers when using OneAPI compilers

6

While installing `imkl-FFTW/2022.2.1-iimpi-2022b` with `--rpath`, I ran into lots of the following errors: ``` mpiicc -c -Wall -Werror -std=c99 -Wall -Werror -std=c99 \ -DMKL_DOUBLE -I../../include -I../../include/fftw wrappers/1d_create_plan.c -o /dev/shm/f115372/imklFFTW/2022.2.1/iimpi-2022b/tmp0j8l_1wg/obj_DOUBLE_intel64_lp64/1d_create_plan.o icx:...

`incomatible type` errors when compiling on Arm

2

I'm trying to install dbarts with R 4.2.2 (and GCC 12.2.0, using [EasyBuild](https://easybuild.io)) on an AWS Arm-based VM, but on both Neoverse N1 and V1 CPUs I'm getting the following...