Bede Constantinides
Bede Constantinides
I'll add this in the next release, hopefully this week
Released in 2.0.0
Hi Jannik, thank you, this is interesting. From your data there certainly appears to be a problem with how `--invert` is implemented. By any chance are you able to send...
Thank you – that's understandable. I will investigate using other data. On Wed, 11 Sep 2024 at 07:39, Jannik Seidel ***@***.***> wrote: > Hi Bede, > the dataset I cannot...
Please accept my apologies for the delay. I've reproduced and pushed a fix to be released in coming days. I had mistakenly assumed that `samtools view -F 12` outputs the...
Released in 2.0.0
Hi John, Thanks for your feedback and suggestion! I *really* appreciate you sharing your results and methods like this. As you've observed, this approach was not intended for metatranscriptomic sequences,...
> To avoid adding another aligner, what do you think about the idea of creating a larger reference for host-rich metatranscriptomic data including that includes T2T + HLA + GRCh38...
Hi John, Thanks for sharing your data, I'm very interested albeit busy with a new job. If you are happy to do so, please keep me posted until I look...
Hi John, This is great work with promising results, thanks for sharing. Well done for modifying Hostile to use HISAT2: Hostile was only briefly intended to accommodate many alignment backends,...