poly
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bebop
A Go package for engineering organisms.
We should add default codon tables of the following organisms: 1. Escherichia coli MG1655 2. Bacillus subtilis 168 3. Vibrio natriegens (whatever type strain) 4. Saccharomyces cerevisiae BY4741/BY4742 (used for...
**Is your feature request related to a problem? Please describe.** Isaac said we should try this. More details to come when I'm not tired. -Tim
**Is your feature request related to a problem? Please describe.** Codon tables should have start codon statistics available for use.
When developing, it makes more sense for GbkLocationString to be a feature attribute, since location is entirely derived from it.
**Describe the bug** In io.go at line 80 + 81, there is a `Circular` and `Linear` field, both as booleans. Couldn't you just have one? (Since if Circular is false,...
**Is your feature request related to a problem? Please describe.** Poly has grown beyond merging PRs into prime(main branch-- renaming). It needs a new release and PR workflow. **Describe the...
**Describe the bug** In `puc19.gbk`the first primer is named `/label="M13/pUC Reverse"`. If read through Poly, this gets changed to `/label="M13pUC Reverse"` **Expected behavior** The labels should be the same.
Run the tests enough and this happens:  Looks like the cyclic and concurrent nature of our current GoldenGate implementation makes it hard...
I'd like to be able to design CRISPR guide RNAs with Poly. Below is a draft spec for a new CRISPR package: ## Spec Our guide RNA design package should...
**Describe the bug** http://rebase.neb.com/cgi-bin/seqsget?BtgZI.NEBC8843.pro parses using the build in parser, but spaces are not removed. We should remove all spaces in the fasta parsers. **To Reproduce** Download the linked fasta...