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Published 20 hours ago • verified publisher icon bcgsc

Public miRbase database

Open anishchakka opened this issue 4 years ago • 2 comments

Hi,

I have recently started working on miRNAseq analysis and would like to follow your pipeline.

I have the reads trimmed and aligned as per your suggestions. In the next step, I'm struggling to setup the database connection for miRbase in the db_connections.cfg file.

I was able to find one for UCSC, but not able to find miRbase database connection.

hg38 genome-mysql.soe.ucsc.edu genomep password

Can you tell me where I can find details for miRbase as well? I'm trying to fill up the below line:

#mirna_21 my_host my_user my_password

Thank you!

anishchakka avatar Sep 25 '20 15:09 anishchakka

@anishchakka were you able to resolve this issue?

ne1al avatar Oct 16 '23 14:10 ne1al

Has anyone figured this out? My PI wants to use this pipeline but I can't create a mirBase connection.

spazm5 avatar Apr 24 '24 18:04 spazm5