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Issue about D. melanogaster

Open Chunhuixu opened this issue 6 years ago • 0 comments

Hi there, I'm using this pipeline to build our in-house mirna tools, but seems like if we use D. melanogaster with species code:dme and genome data dm6, it will generate the error like:

Building hashes from reference data... Checking myRNA formatting to format reference data...Done mirBase...Done UCSC... snoRNA...DBD::mysql::st execute failed: Table 'dm6.kgXref' doesn't exist at Annotate.pm line 389. DBD::mysql::st bind_columns failed: Statement has no result columns to bind (perhaps you need to successfully call execute first, or again) at Annotate.pm line 390. DBD::mysql::st fetchrow_arrayref failed: fetch() without execute() at Annotate.pm line 391.

I just check the dm6 genome in UCSC, seems it's lack of kgXref tables, is there any solution for this problem? thank you!

Chunhui

Chunhuixu avatar Aug 16 '17 18:08 Chunhuixu