TypeError: __init__() missing 1 required positional argument: 'args'

[imsarath]

Describe the bug

Encountered the following error msg when try to run mavis with the local scheduler.

File - "mavis/schedule/pipeline.py", line 887, in read_build_file
TypeError: __init__() missing 1 required positional argument: 'args'

To Reproduce Try to run with a local scheduler

Expected behavior Successful execution of mavis with local cores.

Versions (please complete the following information):

• OS: Ubuntu 18.04.5 LTS
• Python Version 3.6.13
• MAVIS Version 2.2.10
• Blat/BWA Version - 36/bwa-0.7.17

[mattdoug604]

Hi @imsarath, thanks for reporting this.

Version 2.2.10 of MAVIS is still under review. I would recommend using version 2.2.9 for now (https://github.com/bcgsc/mavis/releases/tag/v2.2.9)