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Published 20 hours ago • verified publisher icon bcgsc

Improve hairpin/palindrome removal in long-read assembly

Open kmnip opened this issue 10 months ago • 0 comments

Please report

  • [x] version of RNA-Bloom with java -jar RNA-Bloom.jar -version 2.0.1
  • [x] version of java with java -version 20
  • [x] exact command used to run RNA-Bloom rnabloom -long reads.fastq.gz

Currently, hairpins are still kept if there are read support. The default behavior needs to be more aggressive.

kmnip avatar Aug 15 '23 06:08 kmnip