RNA-Bloom
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Fix bug when read names contain `/`
Please report
-
[x] version of RNA-Bloom with
java -jar RNA-Bloom.jar -version
2.0.0 and earlier versions -
[x] version of java with
java -version
jre-11-openjdk-11.0.16.0.8-1.el7_9.x86_64 -
[x] exact command used to run RNA-Bloom long read assembly mode (
-long
)
Names in long reads containing suffixes /1
and /2
would be trimmed as if they were paired-end reads.
For example, name/1
and name/2
would be trimmed to name
, resulting in two names sharing the same name. This would lead to an error in later stages of the assembly.