RNA-Bloom icon indicating copy to clipboard operation
RNA-Bloom copied to clipboard

Fix bug when read names contain `/`

Open kmnip opened this issue 1 year ago • 0 comments

Please report

  • [x] version of RNA-Bloom with java -jar RNA-Bloom.jar -version 2.0.0 and earlier versions

  • [x] version of java with java -version jre-11-openjdk-11.0.16.0.8-1.el7_9.x86_64

  • [x] exact command used to run RNA-Bloom long read assembly mode (-long)

Names in long reads containing suffixes /1 and /2 would be trimmed as if they were paired-end reads. For example, name/1 and name/2 would be trimmed to name, resulting in two names sharing the same name. This would lead to an error in later stages of the assembly.

kmnip avatar Aug 06 '22 18:08 kmnip