Brandi Cantarel

I "cleaned" the PDB by removing any lines not matching ATOM, TER or END as was observed in the example pdb folder, but I still get this error: ### Computing...

I think I am getting the same error -- just running it on public NA12878 data for workflow testing: `[2022-04-23T00:01:17.022656Z] [530311a99f50] [7705_1] [TaskManager] [ERROR] Failed to complete sub-workflow task: 'CallGenome'...

Oh, I see, there is a "global" install of 0.7.9 but I use a local install -- of 0.7.12 -- I guess my comment want that the command bwa index...

255611210

I tried on both an e2-highmem-16 and nd2-highmem-96, so that's 16 and 96 cpus, I saw this in both instances. when running deep-variant I set num_shards to $(nproc)

So how would that look in the data line? ie would the tumor/normal sample have different formats in the same VCF? or would it be another VCF file for the...