Benjamin Buchfink comments

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                                            Benjamin Buchfink

difference between qcov (ncbi blast) and qcovhsp (diamond blast)

> This executable was not compiled with support for BLAST databases means you have a BLAST database of that name in your directory > diamond makedb --taxonmap prot.accession2taxid.FULL.gz --taxonnodes nodes.dmp...

difference between qcov (ncbi blast) and qcovhsp (diamond blast)

I'm not sure what you mean, the lengths of the sequences are stored in the input fasta files.

difference between qcov (ncbi blast) and qcovhsp (diamond blast)

No there is no such setting.

Issue with loading taxonomy names in Diamond

Please try again with the latest version.

Issue with loading taxonomy names in Diamond

The XML output format does not support taxonomic information, you have to use the tabular format.

All-versus-all, Error code 1

`Error writing file` would indicate that the disk is full or you don't have write permissions to that directory.

random output using long read mode

There seems to be a non-determinism in reporting equally scoring hits. I will fix this when I get the chance.

Build failure on FreeBSD CURRENT after import of llvm/clang v17

Thanks, merged.

Protein alignment an taxonomic binning with DIAMOND v2.0.15 and Megan

This sounds like a problem with megan, please ask your question here: https://megan.cs.uni-tuebingen.de/

full_qqual seems to have become an int (was a string)

Yes indeed, it will be fixed in the next release.