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                                            Chen Sun

bowtie2-build runs without error but without constructing .rev files

Same problem here. I install bowtie2 2.3.4.1 with conda. Build the index of a fungi genome with no errors. The fungi genome is ~10^7 bp. The command I used: `bowtie2-build...

Segmentation fault during geno step

Hi Luca, I am working in it, will let you when I fix it.

Output VCF file is empty

Hi Luca, thank you for catching this. For now, there are two chromosome naming standards: Genome Reference Consortium (e.g. GRCh37) vs University of California at Santa Cruz(e.g. hg19). GRC standard...