Doğukan Bayraktar

Hi, Try fixing your sequencing_summary.txt after converting from multi to single fast5 with this code: ```python with open(sequencing_summary.txt) as file, open(sequencing_summary_fix.txt 'w') as outfile: header = next(file) outfile.write(header) for line...

I have the same issue :( OS: macOS arm64 Sonoma 14.7.1 Browser: N/A Version: Tried on `3.195.13` and `3.195.14`

#1104 Maybe we can also check out these edge cases once the template appears.

@m-jahn by using container instead of containerize, you are using the ad-hoc combination of containers and conda described [here](https://snakemake.readthedocs.io/en/stable/snakefiles/deployment.html#ad-hoc-combination-of-conda-package-management-with-containers). But I think what @harrymatthews50 wants is to use the container...

What is the expected behavior of this? When I build an image using `snakemake --containerize ` and then use `container: oras:...` with `--sdm conda apptainer` my workflow start recreating the...

That does make sense. Thank you for explaining; I did not realize this was the intended use case.

According to the [migration section of the Snakemake docs](https://snakemake.readthedocs.io/en/stable/getting_started/migration.html), support for -stats was dropped, no alternative is listed. I have never used this flag, what kinds of statistics did this...

I took a look and some of this information can be found in the [Snakemake report.](https://snakemake.readthedocs.io/en/stable/snakefiles/reporting.html#reports). Such as runtime and the timeline of jobs. You can download the source files...

To get a minimal report, you need to do the following: Create a new file `wokflow/report/workflow.rst`: ``` My Snakemake workflow ========================= ``` Specify your .rst file in `Snakefile`: ``` ......