bart

I am having the same issue. Starting the docker with defaults and the startup script fails..

I can confirm that with the update it runs without an error. Thanks a lot for fixing this so fast! @Lix1993 It is indeed true that ftp.theseed.org has been unavailable...

Any update on this? I can reproduce this issue with the given test files. ``` repaq -c -i test1.fq.gz -I test2.fq.gz -o testGZ.rfq.xz repaq --compare --in1 test1.fq.gz --in2 test2.fq.gz -r...

Having the same issue when installing from conda (mamba): `mamba create -n checkm2 -c bioconda -c conda-forge checkm2` Installing using the yml file works fine though (with mamba): `mamba env...

Good that you got it working. In my case it installs the diamond as it should from yaml file: `- diamond=2.0.4` `which diamond`: `/home/bart/miniforge3/envs/checkm2/bin/diamond` and it's version: `diamond version` gives...

For what it's worth, I seem to be reproduce this error on Ubuntu 22.04. Mounting a folder like this **fails**: `-v /home/bart/test:/test` // gives the "Error response from daemon: invalid...

I mean this function from kraken2: ` --report REPORT Print a report with aggregate counts/clade to file` It's sounds bit silly of course when there is only one taxon. But...

Thanks, maybe I will :) and congrats! Enjoy your time!